Gm28640 Gene Detail

Summary

• Symbol
  Gm28640
• Name
  predicted gene 28640

• Feature Type
  lncRNA gene
• IDs
  MGI:5579346
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:73960525-73961074 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579346	lncRNA gene	Chr2:73960525-73961074 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005938	lincRNA gene	Chr2:74441549-74442098 (+)
A/J	MGP_AJ_G0005931	lincRNA gene	Chr2:71526721-71527270 (+)
AKR/J	MGP_AKRJ_G0005906	lincRNA gene	Chr2:73475144-73475693 (+)
BALB/cJ	MGP_BALBcJ_G0005909	lincRNA gene	Chr2:71707724-71708273 (+)
C3H/HeJ	MGP_C3HHeJ_G0005857	lincRNA gene	Chr2:73666553-73667102 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006070	lincRNA gene	Chr2:76677129-76677678 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005403	lincRNA gene	Chr2:68943730-68944279 (+)
CAST/EiJ	MGP_CASTEiJ_G0005793	lincRNA gene	Chr2:73949488-73950037 (+)
CBA/J	MGP_CBAJ_G0005842	lincRNA gene	Chr2:79471468-79472017 (+)
DBA/2J	MGP_DBA2J_G0005863	lincRNA gene	Chr2:71114498-71115047 (+)
FVB/NJ	MGP_FVBNJ_G0005888	lincRNA gene	Chr2:70524731-70525280 (+)
LP/J	MGP_LPJ_G0005942	lincRNA gene	Chr2:74320970-74321519 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005876	lincRNA gene	Chr2:81368588-81369137 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006067	lincRNA gene	Chr2:73569508-73570057 (+)
PWK/PhJ	MGP_PWKPhJ_G0005742	lincRNA gene	Chr2:71045051-71045600 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005654	lincRNA gene	Chr2:73806806-73807355 (+)
WSB/EiJ	MGP_WSBEiJ_G0005846	lincRNA gene	Chr2:74021665-74022214 (+)

Homology

• Gene Tree
  Gm28640
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm28640
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099502 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099502	Ensembl Gene Model | MGI Sequence Detail	550	C57BL/6J
transcript	ENSMUST00000190918	Ensembl | MGI Sequence Detail	550	Not Applicable

References

• Summaries
  All 11

  Phenotypes 9
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087