Gm28706 Gene Detail

Summary

• Symbol
  Gm28706
• Name
  predicted gene 28706

• Feature Type
  lncRNA gene
• IDs
  MGI:5579412
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:125372304-125375135 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579412	lncRNA gene	Chr1:125372304-125375135 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004960	lincRNA gene	Chr1:128534431-128537260 (+)
A/J	MGP_AJ_G0004942	lincRNA gene	Chr1:123807178-123809996 (+)
AKR/J	MGP_AKRJ_G0004919	lincRNA gene	Chr1:127435557-127438377 (+)
BALB/cJ	MGP_BALBcJ_G0004923	lincRNA gene	Chr1:124155324-124158153 (+)
C3H/HeJ	MGP_C3HHeJ_G0004872	lincRNA gene	Chr1:127630885-127633705 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005074	lincRNA gene	Chr1:133392571-133395402 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004490	lincRNA gene	Chr1:117212243-117215283 (+)
CAST/EiJ	MGP_CASTEiJ_G0004821	lincRNA gene	Chr1:126524113-126526954 (+)
CBA/J	MGP_CBAJ_G0004864	lincRNA gene	Chr1:137915011-137917831 (+)
DBA/2J	MGP_DBA2J_G0004883	lincRNA gene	Chr1:122812473-122815293 (+)
FVB/NJ	MGP_FVBNJ_G0004902	lincRNA gene	Chr1:121550243-121553072 (+)
LP/J	MGP_LPJ_G0004961	lincRNA gene	Chr1:129873514-129876343 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004887	lincRNA gene	Chr1:143845129-143847958 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005078	lincRNA gene	Chr1:127202975-127205834 (+)
PWK/PhJ	MGP_PWKPhJ_G0004773	lincRNA gene	Chr1:121782828-121785652 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004698	lincRNA gene	Chr1:126139203-126142063 (+)
WSB/EiJ	MGP_WSBEiJ_G0004868	lincRNA gene	Chr1:127143706-127146535 (+)

Homology

• Gene Tree
  Gm28706
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28706
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000102063 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102063	Ensembl Gene Model | MGI Sequence Detail	2832	C57BL/6J
transcript	ENSMUST00000186830	Ensembl | MGI Sequence Detail	355	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28706:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8441	Chr1:125372301-125372308 (+)	1 bp