Gm28856 Gene Detail

Summary

• Symbol
  Gm28856
• Name
  predicted gene 28856

• Feature Type
  lncRNA gene
• IDs
  MGI:5579562
  NCBI Gene: 433347
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:130694121-130712170 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  783 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579562	lncRNA gene	Chr1:130694121-130712170 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004964	lincRNA gene	Chr1:134161885-134184662 (+)
A/J	MGP_AJ_G0004946	lincRNA gene	Chr1:129200814-129218760 (+)
AKR/J	MGP_AKRJ_G0004923	lincRNA gene	Chr1:133002219-133020103 (+)
BALB/cJ	MGP_BALBcJ_G0004927	lincRNA gene	Chr1:129531279-129549615 (+)
C3H/HeJ	MGP_C3HHeJ_G0004876	lincRNA gene	Chr1:133145303-133165530 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005077	lincRNA gene	Chr1:139149161-139183438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004493	lincRNA gene	Chr1:122346887-122361668 (+)
CAST/EiJ	MGP_CASTEiJ_G0004825	lincRNA gene	Chr1:132131932-132154775 (+)
CBA/J	MGP_CBAJ_G0004867	lincRNA gene	Chr1:143965974-143983915 (+)
DBA/2J	MGP_DBA2J_G0004887	lincRNA gene	Chr1:128162802-128180986 (+)
FVB/NJ	MGP_FVBNJ_G0004906	lincRNA gene	Chr1:126807016-126825170 (+)
LP/J	MGP_LPJ_G0004964	lincRNA gene	Chr1:135473691-135497931 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004891	lincRNA gene	Chr1:149717919-149741936 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005082	lincRNA gene	Chr1:132766757-132784668 (+)
PWK/PhJ	MGP_PWKPhJ_G0004777	lincRNA gene	Chr1:127135226-127154059 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004702	lincRNA gene	Chr1:131694828-131714541 (+)
WSB/EiJ	MGP_WSBEiJ_G0004872	lincRNA gene	Chr1:132733306-132756433 (+)

Homology

• Gene Tree
  Gm28856
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28856
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100106 (Evidence)
• NCBI Gene
  433347

Representative Sequences			Length	Strain/Species
genomic	433347	NCBI Gene Model | MGI Sequence Detail	18050	C57BL/6J
transcript	NR_151623	RefSeq | MGI Sequence Detail	2828	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28856:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8569	Chr1:130692708-130692725 (+)	-1,404 bp