Gm28874 Gene Detail

Summary

• Symbol
  Gm28874
• Name
  predicted gene 28874

• Feature Type
  lncRNA gene
• IDs
  MGI:5579580
  NCBI Gene: 102640216
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:131987847-131994419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic

Strain
Comparison

• SNPs within 2kb
  228 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579580	lncRNA gene	Chr4:131987839-131996152 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006528	lincRNA gene	Chr4:134402072-134404882 (+)
A/J	MGP_AJ_G0006520	lincRNA gene	Chr4:128820174-128822993 (+)
AKR/J	MGP_AKRJ_G0006494	lincRNA gene	Chr4:132438848-132442810 (+)
BALB/cJ	MGP_BALBcJ_G0006494	lincRNA gene	Chr4:129430887-129434553 (+)
C3H/HeJ	MGP_C3HHeJ_G0006444	lincRNA gene	Chr4:132692514-132695354 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006660	lincRNA gene	Chr4:139246990-139254274 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006376	lincRNA gene	Chr4:130760385-130763185 (+)
CBA/J	MGP_CBAJ_G0006427	lincRNA gene	Chr4:142815650-142822399 (+)
DBA/2J	MGP_DBA2J_G0006449	lincRNA gene	Chr4:129243570-129246524 (+)
FVB/NJ	MGP_FVBNJ_G0006471	lincRNA gene	Chr4:128091659-128095139 (+)
LP/J	MGP_LPJ_G0006529	lincRNA gene	Chr4:134557912-134561655 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006458	lincRNA gene	Chr4:147414073-147418630 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006664	lincRNA gene	Chr4:132840490-132844665 (+)
PWK/PhJ	MGP_PWKPhJ_G0006313	lincRNA gene	Chr4:125922170-125925295 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006222	lincRNA gene	Chr4:128712725-128715409 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm28874
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm28874
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100813 (Evidence)
• NCBI Gene
  102640216

Representative Sequences			Length	Strain/Species
genomic	102640216	NCBI Gene Model | MGI Sequence Detail	6573	C57BL/6J
transcript	XR_390809	RefSeq | MGI Sequence Detail	879	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Gm28874:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39362	Chr4:131987815-131987828 (+)	-25 bp
Tssr39363	Chr4:131987832-131987849 (+)	-6 bp