Gm28905 Gene Detail

Summary

• Symbol
  Gm28905
• Name
  predicted gene 28905

• Feature Type
  lncRNA gene
• IDs
  MGI:5579611
  NCBI Gene: 102633974
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:9851691-10044363 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  4713 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579611	lncRNA gene	Chr10:9851691-10083725 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005099	lincRNA gene	Chr10:7329259-7493997 (+)
A/J	MGP_AJ_G0005082	lincRNA gene	Chr10:6991495-7137321 (+)
AKR/J	MGP_AKRJ_G0005060	lincRNA gene	Chr10:7144356-7319377 (+)
BALB/cJ	MGP_BALBcJ_G0005063	lincRNA gene	Chr10:6938466-7103000 (+)
C3H/HeJ	MGP_C3HHeJ_G0005012	lincRNA gene	Chr10:7299555-7463748 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005213	lincRNA gene	Chr10:7493240-7671752 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004620	lincRNA gene	Chr10:6465938-6624005 (+)
CAST/EiJ	MGP_CASTEiJ_G0004959	lincRNA gene	Chr10:7204738-7371481 (+)
CBA/J	MGP_CBAJ_G0005002	lincRNA gene	Chr10:7774061-7956329 (+)
DBA/2J	MGP_DBA2J_G0005021	lincRNA gene	Chr10:6880039-7036245 (+)
FVB/NJ	MGP_FVBNJ_G0005043	lincRNA gene	Chr10:6832094-6984917 (+)
LP/J	MGP_LPJ_G0005100	lincRNA gene	Chr10:7123987-7294820 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005026	lincRNA gene	Chr10:7638000-7813418 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005220	lincRNA gene	Chr10:7081678-7247226 (+)
PWK/PhJ	MGP_PWKPhJ_G0004910	lincRNA gene	Chr10:6849161-7005872 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004835	lincRNA gene	Chr10:7177425-7337052 (+)
WSB/EiJ	MGP_WSBEiJ_G0005006	lincRNA gene	Chr10:7094941-7261459 (+)

Homology

• Gene Tree
  Gm28905
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  6

• Ensembl
  ENSMUSG00000101621 (Evidence)
• NCBI Gene
  102633974

Representative Sequences			Length	Strain/Species
genomic	102633974	NCBI Gene Model | MGI Sequence Detail	192673	C57BL/6J
transcript	XR_871455	RefSeq | MGI Sequence Detail	3708	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28905:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3135	Chr10:9852387-9852409 (+)	707 bp