Gm28942 Gene Detail

Summary

• Symbol
  Gm28942
• Name
  predicted gene 28942

• Feature Type
  lncRNA gene
• IDs
  MGI:5579648
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:82797556-82798098 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579648	lncRNA gene	Chr1:82797556-82798098 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004890	lincRNA gene	Chr1:83743218-83743758 (+)
A/J	MGP_AJ_G0004872	lincRNA gene	Chr1:80776079-80776621 (+)
AKR/J	MGP_AKRJ_G0004850	lincRNA gene	Chr1:82978541-82979076 (+)
BALB/cJ	MGP_BALBcJ_G0004853	lincRNA gene	Chr1:80920532-80921065 (+)
C3H/HeJ	MGP_C3HHeJ_G0004802	lincRNA gene	Chr1:83357040-83357582 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005004	lincRNA gene	Chr1:86968663-86969256 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004429	lincRNA gene	Chr1:75999667-76000199 (+)
CAST/EiJ	MGP_CASTEiJ_G0004754	lincRNA gene	Chr1:82766715-82767248 (+)
CBA/J	MGP_CBAJ_G0004795	lincRNA gene	Chr1:89760395-89760930 (+)
DBA/2J	MGP_DBA2J_G0004813	lincRNA gene	Chr1:80063238-80063775 (+)
FVB/NJ	MGP_FVBNJ_G0004832	lincRNA gene	Chr1:79159829-79160363 (+)
LP/J	MGP_LPJ_G0004891	lincRNA gene	Chr1:84859311-84859850 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004817	lincRNA gene	Chr1:93151890-93152425 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005008	lincRNA gene	Chr1:83141866-83142408 (+)
PWK/PhJ	MGP_PWKPhJ_G0004706	lincRNA gene	Chr1:79506630-79507215 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004632	lincRNA gene	Chr1:82353663-82354191 (+)
WSB/EiJ	MGP_WSBEiJ_G0004799	lincRNA gene	Chr1:82938400-82938935 (+)

Homology

• Gene Tree
  Gm28942
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28942
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100170 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100170	Ensembl Gene Model | MGI Sequence Detail	543	C57BL/6J
transcript	ENSMUST00000186334	Ensembl | MGI Sequence Detail	365	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7628	Chr1:82797376-82797386 (+)	-175 bp
Tssr7629	Chr1:82797841-82797846 (+)	288 bp