Gm28989 Gene Detail

Summary

• Symbol
  Gm28989
• Name
  predicted gene 28989

• Feature Type
  lncRNA gene
• IDs
  MGI:5579695
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:106924578-106933304 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic

Strain
Comparison

• SNPs within 2kb
  277 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579695	lncRNA gene	Chr13:106924578-106933304 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003214	antisense lncRNA gene	Chr13:108961175-108972341 (+)
A/J	MGP_AJ_G0003190	antisense lncRNA gene	Chr13:104720584-104730113 (+)
AKR/J	MGP_AKRJ_G0003172	antisense lncRNA gene	Chr13:107903196-107913149 (+)
BALB/cJ	MGP_BALBcJ_G0003177	antisense lncRNA gene	Chr13:105425836-105436130 (+)
C3H/HeJ	MGP_C3HHeJ_G0003133	antisense lncRNA gene	Chr13:107658019-107667854 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003320	antisense lncRNA gene	Chr13:112282024-112290576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002847	antisense lncRNA gene	Chr13:100178570-100186264 (+)
CAST/EiJ	MGP_CASTEiJ_G0003099	antisense lncRNA gene	Chr13:107153813-107159492 (+)
CBA/J	MGP_CBAJ_G0003130	antisense lncRNA gene	Chr13:116592564-116602934 (+)
DBA/2J	MGP_DBA2J_G0003135	antisense lncRNA gene	Chr13:104487687-104497384 (+)
FVB/NJ	MGP_FVBNJ_G0003153	antisense lncRNA gene	Chr13:103146662-103156311 (+)
LP/J	MGP_LPJ_G0003211	antisense lncRNA gene	Chr13:109040981-109048601 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003144	antisense lncRNA gene	Chr13:117065226-117073244 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003321	antisense lncRNA gene	Chr13:107325581-107333415 (+)
PWK/PhJ	MGP_PWKPhJ_G0003057	antisense lncRNA gene	Chr13:103143028-103150085 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003003	antisense lncRNA gene	Chr13:103573844-103580862 (+)
WSB/EiJ	MGP_WSBEiJ_G0003133	antisense lncRNA gene	Chr13:107871299-107880209 (+)

Homology

• Gene Tree
  Gm28989
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101308 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101308	Ensembl Gene Model | MGI Sequence Detail	8727	C57BL/6J
transcript	ENSMUST00000187867	Ensembl | MGI Sequence Detail	1613	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;