Gm29015 Gene Detail

Summary

• Symbol
  Gm29015
• Name
  predicted gene 29015

• Feature Type
  lncRNA gene
• IDs
  MGI:5579721
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:55210486-55210816 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579721	lncRNA gene	Chr14:55210486-55210816 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003248	antisense lncRNA gene	Chr14:48958926-48960550 (+)
A/J	MGP_AJ_G0003224	antisense lncRNA gene	Chr14:47992468-47992798 (+)
AKR/J	MGP_AKRJ_G0003207	antisense lncRNA gene	Chr14:49746610-49746940 (+)
BALB/cJ	MGP_BALBcJ_G0003213	antisense lncRNA gene	Chr14:47968816-47969146 (+)
C3H/HeJ	MGP_C3HHeJ_G0003166	antisense lncRNA gene	Chr14:49432349-49432679 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003355	antisense lncRNA gene	Chr14:51432932-51433262 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002880	antisense lncRNA gene	Chr14:46403993-46404323 (+)
CAST/EiJ	MGP_CASTEiJ_G0003132	antisense lncRNA gene	Chr14:45670915-45671245 (+)
CBA/J	MGP_CBAJ_G0003163	antisense lncRNA gene	Chr14:52994028-52994358 (+)
DBA/2J	MGP_DBA2J_G0003168	antisense lncRNA gene	Chr14:47733254-47733584 (+)
FVB/NJ	MGP_FVBNJ_G0003187	antisense lncRNA gene	Chr14:47195883-47196213 (+)
LP/J	MGP_LPJ_G0003245	antisense lncRNA gene	Chr14:50023602-50023932 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003176	antisense lncRNA gene	Chr14:52375647-52375977 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003357	antisense lncRNA gene	Chr14:48919222-48919552 (+)
PWK/PhJ	MGP_PWKPhJ_G0003090	antisense lncRNA gene	Chr14:44270443-44270893 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003036	antisense lncRNA gene	Chr14:44901105-44901435 (+)
WSB/EiJ	MGP_WSBEiJ_G0003166	antisense lncRNA gene	Chr14:49213715-49214045 (+)

Homology

• Gene Tree
  Gm29015
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29015
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101680 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101680	Ensembl Gene Model | MGI Sequence Detail	331	C57BL/6J
transcript	ENSMUST00000187147	Ensembl | MGI Sequence Detail	207	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29015:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125728	Chr14:55208490-55208499 (+)	-1,991 bp
Tssr125729	Chr14:55209364-55209368 (+)	-1,120 bp