Gm29017 Gene Detail

Summary

• Symbol
  Gm29017
• Name
  predicted gene 29017

• Feature Type
  lncRNA gene
• IDs
  MGI:5579723
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr1:59190206-59208479 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  592 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579723	lncRNA gene	Chr1:59190206-59208479 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002688	antisense lncRNA gene	Chr1:59100303-59117673 (+)
A/J	MGP_AJ_G0002664	antisense lncRNA gene	Chr1:57046250-57063612 (+)
AKR/J	MGP_AKRJ_G0002644	antisense lncRNA gene	Chr1:58641663-58660677 (+)
BALB/cJ	MGP_BALBcJ_G0002650	antisense lncRNA gene	Chr1:57087608-57105510 (+)
C3H/HeJ	MGP_C3HHeJ_G0002610	antisense lncRNA gene	Chr1:58889327-58906607 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002794	antisense lncRNA gene	Chr1:61435971-61454887 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002341	antisense lncRNA gene	Chr1:52871450-52889373 (+)
CAST/EiJ	MGP_CASTEiJ_G0002582	antisense lncRNA gene	Chr1:58028622-58045866 (+)
CBA/J	MGP_CBAJ_G0002605	antisense lncRNA gene	Chr1:63350347-63370563 (+)
DBA/2J	MGP_DBA2J_G0002610	antisense lncRNA gene	Chr1:56469908-56487815 (+)
FVB/NJ	MGP_FVBNJ_G0002630	antisense lncRNA gene	Chr1:55776127-55793358 (+)
LP/J	MGP_LPJ_G0002690	antisense lncRNA gene	Chr1:59980299-59997531 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002621	antisense lncRNA gene	Chr1:66286623-66305784 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002799	antisense lncRNA gene	Chr1:58551820-58569141 (+)
PWK/PhJ	MGP_PWKPhJ_G0002540	antisense lncRNA gene	Chr1:55811104-55829085 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002494	antisense lncRNA gene	Chr1:58075695-58093525 (+)
WSB/EiJ	MGP_WSBEiJ_G0002612	antisense lncRNA gene	Chr1:58255722-58272948 (+)

Homology

• Gene Tree
  Gm29017
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29017
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101586 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101586	Ensembl Gene Model | MGI Sequence Detail	18274	C57BL/6J
transcript	ENSMUST00000190598	Ensembl | MGI Sequence Detail	2092	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm29017:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6859	Chr1:59190048-59190064 (+)	-150 bp
Tssr6860	Chr1:59190073-59190080 (+)	-129 bp
Tssr6861	Chr1:59190090-59190118 (+)	-102 bp