Gm29103 Gene Detail

Summary

• Symbol
  Gm29103
• Name
  predicted gene 29103

• Feature Type
  lncRNA gene
• IDs
  MGI:5579809
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:131890692-131942224 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579809	lncRNA gene	Chr1:131890692-131942224 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015110	unclassified non-coding RNA gene	Chr1:135414785-135475374 (+)
A/J	MGP_AJ_G0015083	unclassified non-coding RNA gene	Chr1:130405026-130456488 (+)
AKR/J	MGP_AKRJ_G0015046	unclassified non-coding RNA gene	Chr1:134233227-134288500 (+)
BALB/cJ	MGP_BALBcJ_G0015046	unclassified non-coding RNA gene	Chr1:130724703-130776711 (+)
C3H/HeJ	MGP_C3HHeJ_G0014869	unclassified non-coding RNA gene	Chr1:134381063-134435102 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015503	unclassified non-coding RNA gene	Chr1:140458768-140514149 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013249	unclassified non-coding RNA gene	Chr1:123548084-123599795 (+)
CAST/EiJ	MGP_CASTEiJ_G0014424	unclassified non-coding RNA gene	Chr1:133382471-133435505 (+)
CBA/J	MGP_CBAJ_G0014848	unclassified non-coding RNA gene	Chr1:145237446-145294457 (+)
DBA/2J	MGP_DBA2J_G0014941	unclassified non-coding RNA gene	Chr1:129368464-129420125 (+)
FVB/NJ	MGP_FVBNJ_G0014953	unclassified non-coding RNA gene	Chr1:127991761-128043334 (+)
LP/J	MGP_LPJ_G0015024	unclassified non-coding RNA gene	Chr1:136728891-136783993 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014980	unclassified non-coding RNA gene	Chr1:151021539-151088765 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015541	unclassified non-coding RNA gene	Chr1:133993853-134048722 (+)
PWK/PhJ	MGP_PWKPhJ_G0014216	unclassified non-coding RNA gene	Chr1:128338394-128395652 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014005	unclassified non-coding RNA gene	Chr1:132940474-132992239 (+)
WSB/EiJ	MGP_WSBEiJ_G0014527	unclassified non-coding RNA gene	Chr1:133978209-134035510 (+)

Homology

• Gene Tree
  Gm29103
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm29103
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100037 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100037	Ensembl Gene Model | MGI Sequence Detail	51533	C57BL/6J
transcript	ENSMUST00000191034	Ensembl | MGI Sequence Detail	598	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29103:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8695	Chr1:131890679-131890707 (+)	1 bp