Gm29128 Gene Detail

Summary

• Symbol
  Gm29128
• Name
  predicted gene 29128

• Feature Type
  lncRNA gene
• IDs
  MGI:5579834
  NCBI Gene: 102634543
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:31175107-31189186 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  620 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579834	lncRNA gene	Chr1:31175107-31189186 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002655	antisense lncRNA gene	Chr1:29362980-29377053 (+)
A/J	MGP_AJ_G0002631	antisense lncRNA gene	Chr1:28659429-28673494 (+)
AKR/J	MGP_AKRJ_G0002611	antisense lncRNA gene	Chr1:28997407-29011469 (+)
BALB/cJ	MGP_BALBcJ_G0002617	antisense lncRNA gene	Chr1:28387007-28401071 (+)
C3H/HeJ	MGP_C3HHeJ_G0002577	antisense lncRNA gene	Chr1:29160878-29174945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002761	antisense lncRNA gene	Chr1:30700955-30715022 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002308	antisense lncRNA gene	Chr1:26167234-26184934 (+)
CAST/EiJ	MGP_CASTEiJ_G0002550	antisense lncRNA gene	Chr1:29058822-29077259 (+)
CBA/J	MGP_CBAJ_G0002572	antisense lncRNA gene	Chr1:31541247-31555315 (+)
DBA/2J	MGP_DBA2J_G0002577	antisense lncRNA gene	Chr1:28100584-28114869 (+)
FVB/NJ	MGP_FVBNJ_G0002597	antisense lncRNA gene	Chr1:27663435-27677538 (+)
LP/J	MGP_LPJ_G0002657	antisense lncRNA gene	Chr1:29645771-29659848 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002588	antisense lncRNA gene	Chr1:33624817-33638956 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002766	antisense lncRNA gene	Chr1:28956958-28971021 (+)
PWK/PhJ	MGP_PWKPhJ_G0002507	antisense lncRNA gene	Chr1:27784882-27800894 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002461	antisense lncRNA gene	Chr1:29008619-29022720 (+)
WSB/EiJ	MGP_WSBEiJ_G0002579	antisense lncRNA gene	Chr1:28916359-28931994 (+)

Homology

• Gene Tree
  Gm29128
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29128
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000100910 (Evidence)
• NCBI Gene
  102634543

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100910	Ensembl Gene Model | MGI Sequence Detail	14080	C57BL/6J
transcript	ENSMUST00000186448	Ensembl | MGI Sequence Detail	2858	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29128:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29	Chr1:31181517-31181540 (+)	6,422 bp