Gm29243 Gene Detail

Summary

• Symbol
  Gm29243
• Name
  predicted gene 29243

• Feature Type
  lncRNA gene
• IDs
  MGI:5579949
  NCBI Gene: 102636691
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:34683984-34693304 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579949	lncRNA gene	Chr8:34683947-34693314 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007318	lincRNA gene	Chr8:32735975-32745324 (+)
A/J	MGP_AJ_G0007316	lincRNA gene	Chr8:31444028-31453377 (+)
AKR/J	MGP_AKRJ_G0007287	lincRNA gene	Chr8:32432839-32442188 (+)
BALB/cJ	MGP_BALBcJ_G0007294	lincRNA gene	Chr8:31560561-31569910 (+)
C3H/HeJ	MGP_C3HHeJ_G0007237	lincRNA gene	Chr8:32760703-32770052 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007464	lincRNA gene	Chr8:33962197-33971483 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006662	lincRNA gene	Chr8:28427174-28436743 (+)
CAST/EiJ	MGP_CASTEiJ_G0007139	lincRNA gene	Chr8:32216710-32226095 (+)
CBA/J	MGP_CBAJ_G0007220	lincRNA gene	Chr8:35294311-35303660 (+)
DBA/2J	MGP_DBA2J_G0007242	lincRNA gene	Chr8:31415543-31424892 (+)
FVB/NJ	MGP_FVBNJ_G0007263	lincRNA gene	Chr8:31070138-31079424 (+)
LP/J	MGP_LPJ_G0007323	lincRNA gene	Chr8:32692530-32701879 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007240	lincRNA gene	Chr8:34805478-34814827 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007466	lincRNA gene	Chr8:32516129-32525415 (+)
PWK/PhJ	MGP_PWKPhJ_G0007081	lincRNA gene	Chr8:30943791-30953197 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006989	lincRNA gene	Chr8:31780397-31789739 (+)
WSB/EiJ	MGP_WSBEiJ_G0007199	lincRNA gene	Chr8:32692009-32701358 (+)

Homology

• Gene Tree
  Gm29243
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000100605 (Evidence)
• NCBI Gene
  102636691

Representative Sequences			Length	Strain/Species
genomic	102636691	NCBI Gene Model | MGI Sequence Detail	9321	C57BL/6J
transcript	NR_166073	RefSeq | MGI Sequence Detail	452	ZRU/MplStud

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29243:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76870	Chr8:34683978-34684000 (+)	5 bp