Gm29254 Gene Detail

Summary

• Symbol
  Gm29254
• Name
  predicted gene 29254

• Feature Type
  lncRNA gene
• IDs
  MGI:5579960
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:20907275-20911050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579960	lncRNA gene	Chr5:20907275-20911050 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000002	lncRNA gene	Chr5:18216401-18220176 (+)
A/J	MGP_AJ_G0000002	lncRNA gene	Chr5:17644032-17647807 (+)
AKR/J	MGP_AKRJ_G0000002	lncRNA gene	Chr5:18323597-18327372 (+)
BALB/cJ	MGP_BALBcJ_G0000002	lncRNA gene	Chr5:18076391-18080166 (+)
C3H/HeJ	MGP_C3HHeJ_G0000002	lncRNA gene	Chr5:18345553-18349328 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000002	lncRNA gene	Chr5:19577900-19581675 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000002	lncRNA gene	Chr5:15726170-15729918 (+)
CAST/EiJ	MGP_CASTEiJ_G0000002	lncRNA gene	Chr5:17699999-17703802 (+)
CBA/J	MGP_CBAJ_G0000002	lncRNA gene	Chr5:19773916-19777691 (+)
DBA/2J	MGP_DBA2J_G0000002	lncRNA gene	Chr5:17922648-17926423 (+)
FVB/NJ	MGP_FVBNJ_G0000002	lncRNA gene	Chr5:17332234-17336009 (+)
LP/J	MGP_LPJ_G0000002	lncRNA gene	Chr5:18635447-18639222 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000002	lncRNA gene	Chr5:21117786-21121561 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000002	lncRNA gene	Chr5:17973191-17976966 (+)
PWK/PhJ	MGP_PWKPhJ_G0000002	lncRNA gene	Chr5:16992043-16995854 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000002	lncRNA gene	Chr5:17347202-17350961 (+)
WSB/EiJ	MGP_WSBEiJ_G0000002	lncRNA gene	Chr5:18019005-18022780 (+)

Homology

• Gene Tree
  Gm29254
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm29254
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000073174 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073174	Ensembl Gene Model | MGI Sequence Detail	3776	C57BL/6J
transcript	ENSMUST00000189302	Ensembl | MGI Sequence Detail	883	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm29254:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45274	Chr5:20907127-20907212 (+)	-105 bp