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Sphkos Gene Detail
Summary
  • Symbol
    Sphkos
  • Name
    sphingosine kinase 1, opposite strand lncRNA
  • Synonyms
    Gm29292
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5579998
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:116420041-116423903 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    181 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5579998
 lncRNA gene Chr11:116420041-116423903 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003103
 antisense lncRNA gene Chr11:120663930-120667768 (-)
A/J MGP_AJ_G0003081
 antisense lncRNA gene Chr11:115381058-115384936 (-)
AKR/J MGP_AKRJ_G0003062
 antisense lncRNA gene Chr11:118815712-118819584 (-)
BALB/cJ MGP_BALBcJ_G0003068
 antisense lncRNA gene Chr11:115780708-115784539 (-)
C3H/HeJ MGP_C3HHeJ_G0003024
 antisense lncRNA gene Chr11:119172502-119176360 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003210
 antisense lncRNA gene Chr11:124345688-124349512 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002745
 antisense lncRNA gene Chr11:112380326-112384134 (-)
CAST/EiJ MGP_CASTEiJ_G0002992
 antisense lncRNA gene Chr11:120547653-120551545 (-)
CBA/J MGP_CBAJ_G0003021
 antisense lncRNA gene Chr11:129275267-129279121 (-)
DBA/2J MGP_DBA2J_G0003026
 antisense lncRNA gene Chr11:114810049-114813878 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0003101
 antisense lncRNA gene Chr11:121047139-121050993 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003034
 antisense lncRNA gene Chr11:128312488-128316342 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003214
 antisense lncRNA gene Chr11:119480306-119484156 (-)
PWK/PhJ MGP_PWKPhJ_G0002951
 antisense lncRNA gene Chr11:116134086-116138029 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002895
 antisense lncRNA gene Chr11:119228511-119232383 (-)
WSB/EiJ MGP_WSBEiJ_G0003023
 antisense lncRNA gene Chr11:119443891-119447739 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    19
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000100779 Ensembl Gene Model | MGI Sequence Detail 3863 C57BL/6J ±  kb
transcript ENSMUST00000186169 Ensembl | MGI Sequence Detail 766 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:7614792
References
more
  • Summaries
    All 3
  • Earliest
    J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory