Gm29358 Gene Detail

Summary

• Symbol
  Gm29358
• Name
  predicted gene 29358

• Feature Type
  lncRNA gene
• IDs
  MGI:5580064
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:74334762-74338026 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580064	lncRNA gene	Chr1:74334762-74338026 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036866	sense intronic lncRNA gene	Chr1:74883502-74886766 (+)
A/J	MGP_AJ_G0036854	sense intronic lncRNA gene	Chr1:72263068-72266332 (+)
AKR/J	MGP_AKRJ_G0036803	sense intronic lncRNA gene	Chr1:74275931-74279195 (+)
BALB/cJ	MGP_BALBcJ_G0036845	sense intronic lncRNA gene	Chr1:72335747-72339011 (+)
C3H/HeJ	MGP_C3HHeJ_G0036530	sense intronic lncRNA gene	Chr1:74604110-74607374 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037358	sense intronic lncRNA gene	Chr1:77791060-77794324 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034420	sense intronic lncRNA gene	Chr1:67847458-67851115 (+)
CAST/EiJ	MGP_CASTEiJ_G0035720	sense intronic lncRNA gene	Chr1:73919932-73923200 (+)
CBA/J	MGP_CBAJ_G0036506	sense intronic lncRNA gene	Chr1:80314993-80318257 (+)
DBA/2J	MGP_DBA2J_G0036682	sense intronic lncRNA gene	Chr1:71599697-71602961 (+)
FVB/NJ	MGP_FVBNJ_G0036634	sense intronic lncRNA gene	Chr1:70773571-70776835 (+)
LP/J	MGP_LPJ_G0036729	sense intronic lncRNA gene	Chr1:75988878-75992142 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036639	sense intronic lncRNA gene	Chr1:83735554-83738818 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037474	sense intronic lncRNA gene	Chr1:74332961-74336225 (+)
PWK/PhJ	MGP_PWKPhJ_G0035413	sense intronic lncRNA gene	Chr1:71044127-71047374 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035228	sense intronic lncRNA gene	Chr1:73698346-73701597 (+)
WSB/EiJ	MGP_WSBEiJ_G0035922	sense intronic lncRNA gene	Chr1:74135712-74138976 (+)

Homology

• Gene Tree
  Gm29358
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29358
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000099931 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099931	Ensembl Gene Model | MGI Sequence Detail	3265	C57BL/6J
transcript	ENSMUST00000187941	Ensembl | MGI Sequence Detail	3227	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm29358:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7377	Chr1:74333115-74333142 (+)	-1,633 bp
Tssr7378	Chr1:74334793-74334806 (+)	38 bp
Tssr7379	Chr1:74334822-74334831 (+)	65 bp
Tssr7380	Chr1:74335157-74335160 (+)	397 bp