Tuba5-ps Pseudogene Detail

Summary

• Symbol
  Tuba5-ps
• Name
  tubulin alpha 5, pseudogene
• Synonyms
  Gm29376

• Feature Type
  pseudogene
• IDs
  MGI:5580082
  NCBI Gene: 102634941
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:134447716-134451877 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580082	pseudogene	Chr1:134441166-134455309 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039918	pseudogene	Chr1:138191337-138195501 (+)
A/J	MGP_AJ_G0039926	pseudogene	Chr1:132983233-132987381 (+)
AKR/J	MGP_AKRJ_G0039847	pseudogene	Chr1:136951216-136955330 (+)
BALB/cJ	MGP_BALBcJ_G0039903	pseudogene	Chr1:133317384-133321515 (+)
C3H/HeJ	MGP_C3HHeJ_G0039550	pseudogene	Chr1:137047951-137052094 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040476	pseudogene	Chr1:143229645-143233790 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037046	pseudogene	Chr1:126115452-126119726 (+)
CAST/EiJ	MGP_CASTEiJ_G0038660	pseudogene	Chr1:136112158-136116309 (+)
CBA/J	MGP_CBAJ_G0039518	pseudogene	Chr1:148174441-148178587 (+)
DBA/2J	MGP_DBA2J_G0039720	pseudogene	Chr1:131995065-131999179 (+)
FVB/NJ	MGP_FVBNJ_G0039681	pseudogene	Chr1:130629824-130633960 (+)
LP/J	MGP_LPJ_G0039755	pseudogene	Chr1:139463274-139467453 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039671	pseudogene	Chr1:153877526-153881683 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040569	pseudogene	Chr1:136699084-136703232 (+)
PWK/PhJ	MGP_PWKPhJ_G0038341	pseudogene	Chr1:131019754-131023874 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038072	pseudogene	Chr1:135655771-135659804 (+)
WSB/EiJ	MGP_WSBEiJ_G0038881	pseudogene	Chr1:136713129-136718517 (+)

Homology

• MGI Vertebrate Homology
  Tuba5-ps stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Tuba5-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Tuba5-ps
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  Xenbase tuba5
  ZFIN tuba5

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000101955 (Evidence)
• NCBI Gene
  102634941

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101955	Ensembl Gene Model | MGI Sequence Detail	4162	C57BL/6J
transcript	ENSMUST00000189357	Ensembl | MGI Sequence Detail	835	Not Applicable

Other
Accession IDs

MGI:6407388

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45