Gm29387 Gene Detail

Summary

• Symbol
  Gm29387
• Name
  predicted gene 29387

• Feature Type
  lncRNA gene
• IDs
  MGI:5580093
  NCBI Gene: 108167716
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:102436499-102447907 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  455 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580093	lncRNA gene	Chr9:102436486-102448833 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007497	lincRNA gene	Chr9:104123959-104135302 (+)
A/J	MGP_AJ_G0007492	lincRNA gene	Chr9:100388519-100399077 (+)
AKR/J	MGP_AKRJ_G0007464	lincRNA gene	Chr9:102860528-102870079 (+)
BALB/cJ	MGP_BALBcJ_G0007469	lincRNA gene	Chr9:100101370-100111104 (+)
C3H/HeJ	MGP_C3HHeJ_G0007414	lincRNA gene	Chr9:103267730-103281858 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007641	lincRNA gene	Chr9:107034567-107044704 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006822	lincRNA gene	Chr9:97983852-97993268 (+)
CAST/EiJ	MGP_CASTEiJ_G0007317	lincRNA gene	Chr9:103081223-103092923 (+)
CBA/J	MGP_CBAJ_G0007395	lincRNA gene	Chr9:110762822-110772527 (+)
DBA/2J	MGP_DBA2J_G0007421	lincRNA gene	Chr9:99888010-99897981 (+)
FVB/NJ	MGP_FVBNJ_G0007437	lincRNA gene	Chr9:98684303-98694055 (+)
LP/J	MGP_LPJ_G0007501	lincRNA gene	Chr9:104328245-104339256 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007418	lincRNA gene	Chr9:112601129-112611724 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007646	lincRNA gene	Chr9:103112384-103123436 (+)
PWK/PhJ	MGP_PWKPhJ_G0007258	lincRNA gene	Chr9:100124777-100134859 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007162	lincRNA gene	Chr9:103146716-103156220 (+)
WSB/EiJ	MGP_WSBEiJ_G0007377	lincRNA gene	Chr9:102993598-103003198 (+)

Homology

• Gene Tree
  Gm29387
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100279 (Evidence)
• NCBI Gene
  108167716

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100279	Ensembl Gene Model | MGI Sequence Detail	11409	C57BL/6J
transcript	ENSMUST00000189074	Ensembl | MGI Sequence Detail	623	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29387:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86724	Chr9:102436491-102436506 (+)	0 bp