Gm29418 Gene Detail

Summary

• Symbol
  Gm29418
• Name
  predicted gene 29418

• Feature Type
  lncRNA gene
• IDs
  MGI:5580124
  NCBI Gene: 102631830
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:86103596-86108776 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580124	lncRNA gene	Chr17:86103596-86131472 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005759	lincRNA gene	Chr17:89080440-89112740 (-)
A/J	MGP_AJ_G0005746	lincRNA gene	Chr17:86213674-86242289 (-)
AKR/J	MGP_AKRJ_G0005725	lincRNA gene	Chr17:87625831-87654319 (-)
BALB/cJ	MGP_BALBcJ_G0005726	lincRNA gene	Chr17:86052479-86080885 (-)
C3H/HeJ	MGP_C3HHeJ_G0005674	lincRNA gene	Chr17:88507054-88534862 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005886	lincRNA gene	Chr17:92192757-92221685 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005234	lincRNA gene	Chr17:81401591-81428941 (-)
CAST/EiJ	MGP_CASTEiJ_G0005617	lincRNA gene	Chr17:89308037-89336794 (-)
CBA/J	MGP_CBAJ_G0005662	lincRNA gene	Chr17:96024803-96057317 (-)
DBA/2J	MGP_DBA2J_G0005680	lincRNA gene	Chr17:84673055-84701133 (-)
FVB/NJ	MGP_FVBNJ_G0005706	lincRNA gene	Chr17:84166658-84195307 (-)
LP/J	MGP_LPJ_G0005761	lincRNA gene	Chr17:89836955-89867049 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005691	lincRNA gene	Chr17:96016617-96048856 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005886	lincRNA gene	Chr17:88141704-88178920 (-)
PWK/PhJ	MGP_PWKPhJ_G0005561	lincRNA gene	Chr17:84280515-84310927 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005478	lincRNA gene	Chr17:84940497-84967998 (-)
WSB/EiJ	MGP_WSBEiJ_G0005668	lincRNA gene	Chr17:88991158-89021220 (-)

Homology

• Gene Tree
  Gm29418
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000100345 (Evidence)
• NCBI Gene
  102631830

Representative Sequences			Length	Strain/Species
genomic	102631830	NCBI Gene Model | MGI Sequence Detail	5181	C57BL/6J
transcript	XR_877082	RefSeq | MGI Sequence Detail	2100	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29418:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149723	Chr17:86107844-86107855 (-)	926 bp