Gm29438 Gene Detail

Summary

• Symbol
  Gm29438
• Name
  predicted gene 29438

• Feature Type
  sense intronic lncRNA gene
• IDs
  MGI:5580144
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:72081185-72083797 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580144	sense intronic lncRNA gene	Chr6:72081185-72083797 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001944	unclassified gene	Chr6:72620241-72622853 (+)
A/J	MGP_AJ_G0001921	unclassified gene	Chr6:69824034-69826646 (+)
AKR/J	MGP_AKRJ_G0001908	unclassified gene	Chr6:71860576-71863181 (+)
BALB/cJ	MGP_BALBcJ_G0001918	unclassified gene	Chr6:69851210-69853822 (+)
C3H/HeJ	MGP_C3HHeJ_G0002007	unclassified gene	Chr6:112363539-112366151 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002039	unclassified gene	Chr6:74542412-74545024 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001695	unclassified gene	Chr6:68970193-68972760 (+)
CAST/EiJ	MGP_CASTEiJ_G0001862	unclassified gene	Chr6:71725644-71728194 (+)
CBA/J	MGP_CBAJ_G0001888	unclassified gene	Chr6:77560646-77563258 (+)
DBA/2J	MGP_DBA2J_G0001892	unclassified gene	Chr6:69219895-69222507 (+)
FVB/NJ	MGP_FVBNJ_G0001900	unclassified gene	Chr6:68587576-68590188 (+)
LP/J	MGP_LPJ_G0001947	unclassified gene	Chr6:72541643-72544255 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001878	unclassified gene	Chr6:80973266-80975858 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002029	unclassified gene	Chr6:71676937-71679549 (+)
PWK/PhJ	MGP_PWKPhJ_G0001825	unclassified gene	Chr6:68116911-68119499 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001787	unclassified gene	Chr6:70415714-70418312 (+)
WSB/EiJ	MGP_WSBEiJ_G0001888	unclassified gene	Chr6:72046177-72048789 (+)

Homology

• Gene Tree
  Gm29438
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm29438
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000101823 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101823	Ensembl Gene Model | MGI Sequence Detail	2613	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Gm29438:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57063	Chr6:72081185-72081190 (+)	3 bp