Gm29478 Gene Detail

Summary

• Symbol
  Gm29478
• Name
  predicted gene 29478

• Feature Type
  lncRNA gene
• IDs
  MGI:5580184
  NCBI Gene: 102633433
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr9:91286527-91444871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  4100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580184	lncRNA gene	Chr9:91285546-91489288 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007479	lincRNA gene	Chr9:92420264-92602035 (+)
A/J	MGP_AJ_G0007474	lincRNA gene	Chr9:89209531-89367933 (+)
AKR/J	MGP_AKRJ_G0007446	lincRNA gene	Chr9:91279950-91447890 (+)
BALB/cJ	MGP_BALBcJ_G0007451	lincRNA gene	Chr9:88834734-88997134 (+)
C3H/HeJ	MGP_C3HHeJ_G0007396	lincRNA gene	Chr9:91755866-91928786 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007623	lincRNA gene	Chr9:94992967-95166909 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006806	lincRNA gene	Chr9:87280565-87448255 (+)
CAST/EiJ	MGP_CASTEiJ_G0007299	lincRNA gene	Chr9:91510955-91688521 (+)
CBA/J	MGP_CBAJ_G0007377	lincRNA gene	Chr9:98262745-98450913 (+)
DBA/2J	MGP_DBA2J_G0007403	lincRNA gene	Chr9:88732804-88893002 (+)
FVB/NJ	MGP_FVBNJ_G0007419	lincRNA gene	Chr9:87713755-87875877 (+)
LP/J	MGP_LPJ_G0007483	lincRNA gene	Chr9:92634771-92812314 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007400	lincRNA gene	Chr9:100048710-100276864 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007628	lincRNA gene	Chr9:91537323-91701418 (+)
PWK/PhJ	MGP_PWKPhJ_G0007240	lincRNA gene	Chr9:88899718-89072165 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007144	lincRNA gene	Chr9:91557476-91730340 (+)
WSB/EiJ	MGP_WSBEiJ_G0007359	lincRNA gene	Chr9:91431672-91608776 (+)

Homology

• Gene Tree
  Gm29478
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29478
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  11

• Ensembl
  ENSMUSG00000100341 (Evidence)
• NCBI Gene
  102633433

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100341	Ensembl Gene Model | MGI Sequence Detail	158345	C57BL/6J
transcript	ENSMUST00000191272	Ensembl | MGI Sequence Detail	688	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29478:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86487	Chr9:91285518-91285527 (+)	-1,004 bp
Tssr86488	Chr9:91286553-91286584 (+)	42 bp
Tssr86489	Chr9:91319902-91319907 (+)	33,378 bp