Gm29601 Gene Detail

Summary

• Symbol
  Gm29601
• Name
  predicted gene 29601

• Feature Type
  lncRNA gene
• IDs
  MGI:5580307
  NCBI Gene: 105246667
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:96470784-96484428 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  797 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580307	lncRNA gene	Chr1:96470784-96484428 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004925	lincRNA gene	Chr1:98264816-98279982 (-)
A/J	MGP_AJ_G0004907	lincRNA gene	Chr1:94809381-94823017 (-)
AKR/J	MGP_AKRJ_G0004885	lincRNA gene	Chr1:97579504-97595408 (-)
BALB/cJ	MGP_BALBcJ_G0004888	lincRNA gene	Chr1:94981089-94994638 (-)
C3H/HeJ	MGP_C3HHeJ_G0004837	lincRNA gene	Chr1:97848136-97862321 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005038	lincRNA gene	Chr1:102174795-102188350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004461	lincRNA gene	Chr1:89214841-89230531 (-)
CAST/EiJ	MGP_CASTEiJ_G0004787	lincRNA gene	Chr1:97150699-97174599 (-)
CBA/J	MGP_CBAJ_G0004829	lincRNA gene	Chr1:105500783-105518146 (-)
DBA/2J	MGP_DBA2J_G0004848	lincRNA gene	Chr1:94021841-94035451 (-)
FVB/NJ	MGP_FVBNJ_G0004867	lincRNA gene	Chr1:93056656-93071426 (-)
LP/J	MGP_LPJ_G0004926	lincRNA gene	Chr1:99539679-99554224 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004852	lincRNA gene	Chr1:109031620-109046628 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005043	lincRNA gene	Chr1:97581014-97594597 (-)
PWK/PhJ	MGP_PWKPhJ_G0004740	lincRNA gene	Chr1:93284938-93297847 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004666	lincRNA gene	Chr1:96468359-96482929 (-)
WSB/EiJ	MGP_WSBEiJ_G0004833	lincRNA gene	Chr1:97404948-97421169 (-)

Homology

• Gene Tree
  Gm29601
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29601
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100336 (Evidence)
• NCBI Gene
  105246667

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100336	Ensembl Gene Model | MGI Sequence Detail	13645	C57BL/6J
transcript	ENSMUST00000187961	Ensembl | MGI Sequence Detail	1349	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm29601:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13063	Chr1:96484443-96484453 (-)	-20 bp