Gm29678 Gene Detail

Summary

• Symbol
  Gm29678
• Name
  predicted gene, 29678

• Feature Type
  lncRNA gene
• IDs
  MGI:5588837
  NCBI Gene: 433390
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:190135845-190149342 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  431 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588837	lncRNA gene	Chr1:190135842-190149342 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005080	lincRNA gene	Chr1:197375987-197390389 (+)
A/J	MGP_AJ_G0005063	lincRNA gene	Chr1:189287092-189301614 (+)
AKR/J	MGP_AKRJ_G0005041	lincRNA gene	Chr1:194891754-194905374 (+)
BALB/cJ	MGP_BALBcJ_G0005044	lincRNA gene	Chr1:189972862-189986935 (+)
C3H/HeJ	MGP_C3HHeJ_G0004993	lincRNA gene	Chr1:195752549-195767877 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005194	lincRNA gene	Chr1:203668243-203685712 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004601	lincRNA gene	Chr1:180201367-180215013 (+)
CAST/EiJ	MGP_CASTEiJ_G0004940	lincRNA gene	Chr1:195317787-195331362 (+)
CBA/J	MGP_CBAJ_G0004983	lincRNA gene	Chr1:211229378-211242957 (+)
DBA/2J	MGP_DBA2J_G0005002	lincRNA gene	Chr1:188027083-188041385 (+)
FVB/NJ	MGP_FVBNJ_G0005023	lincRNA gene	Chr1:186147828-186162182 (+)
LP/J	MGP_LPJ_G0005081	lincRNA gene	Chr1:198556433-198569845 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005006	lincRNA gene	Chr1:217954251-217968636 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005201	lincRNA gene	Chr1:194791451-194804971 (+)
PWK/PhJ	MGP_PWKPhJ_G0004891	lincRNA gene	Chr1:187297805-187311836 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004816	lincRNA gene	Chr1:193754648-193768153 (+)
WSB/EiJ	MGP_WSBEiJ_G0004987	lincRNA gene	Chr1:194991006-195006137 (+)

Homology

• Gene Tree
  Gm29678
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000103644 (Evidence)
• NCBI Gene
  433390

Representative Sequences			Length	Strain/Species
genomic	433390	NCBI Gene Model | MGI Sequence Detail	13498	C57BL/6J
transcript	NR_151624	RefSeq | MGI Sequence Detail	1131	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;