Gm29781 Pseudogene Detail

Summary

• Symbol
  Gm29781
• Name
  predicted gene, 29781

• Feature Type
  pseudogene
• IDs
  MGI:5588940
  NCBI Gene: 101056113
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:109102646-109103123 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588940	pseudogene	Chr6:109102477-109103212 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013638	pseudogene	Chr6:111424964-111425441 (+)
A/J	MGP_AJ_G0013622	pseudogene	Chr6:107195261-107195738 (+)
AKR/J	MGP_AKRJ_G0013585	pseudogene	Chr6:110059988-110060465 (+)
BALB/cJ	MGP_BALBcJ_G0013602	pseudogene	Chr6:107109031-107109508 (+)
C3H/HeJ	MGP_C3HHeJ_G0013336	pseudogene	Chr6:74249596-74250073 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013988	pseudogene	Chr6:114348541-114349018 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013141	pseudogene	Chr6:110452729-110453205 (+)
CBA/J	MGP_CBAJ_G0013420	pseudogene	Chr6:118774411-118774888 (+)
DBA/2J	MGP_DBA2J_G0013500	pseudogene	Chr6:106310334-106310811 (+)
FVB/NJ	MGP_FVBNJ_G0013501	pseudogene	Chr6:105360937-105361414 (+)
LP/J	MGP_LPJ_G0013577	pseudogene	Chr6:111460685-111461162 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013514	pseudogene	Chr6:122990610-122991087 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013979	pseudogene	Chr6:110032604-110033081 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013192	pseudogene	Chr6:110574597-110575074 (+)

Homology

• Gene Tree
  Gm29781
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000107501 (Evidence)
• NCBI Gene
  101056113

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107501	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000203862	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm29781:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58124	Chr6:109102477-109102478 (+)	-168 bp