Gm29941 Gene Detail

Summary

• Symbol
  Gm29941
• Name
  predicted gene, 29941

• Feature Type
  lncRNA gene
• IDs
  MGI:5589100
  NCBI Gene: 102631657
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr2:129154409-129268815 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2977 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589100	lncRNA gene	Chr2:129154409-129268815 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  4

• NCBI Gene
  102631657

Representative Sequences			Length	Strain/Species
genomic	102631657	NCBI Gene Model | MGI Sequence Detail	114407	C57BL/6J
transcript	AK143089	GenBank | ENA | DDBJ | MGI Sequence Detail	1932	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:90438 Mouse Genome Informatics Scientific Curators, Obtaining and loading genome assembly coordinates from NCBI annotations. 2005;

TSS for Gm29941:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20113	Chr2:129156065-129156111 (+)	1,679 bp
Tssr20114	Chr2:129207065-129207084 (+)	52,666 bp
Tssr20115	Chr2:129207111-129207130 (+)	52,712 bp
Tssr20116	Chr2:129207870-129207879 (+)	53,466 bp
Tssr20117	Chr2:129207883-129207916 (+)	53,491 bp
Tssr20118	Chr2:129207919-129207928 (+)	53,515 bp
Tssr20119	Chr2:129207952-129207978 (+)	53,556 bp
Tssr20120	Chr2:129209188-129209210 (+)	54,790 bp
Tssr20121	Chr2:129209221-129209245 (+)	54,824 bp
Tssr20122	Chr2:129209271-129209283 (+)	54,868 bp