Gm29994 Gene Detail

Summary

• Symbol
  Gm29994
• Name
  predicted gene, 29994

• Feature Type
  lncRNA gene
• IDs
  MGI:5589153
  NCBI Gene: 102631725
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:37962061-37963253 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589153	lncRNA gene	Chr18:37960164-37963283 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003446	antisense lncRNA gene	Chr18:36246131-36247323 (-)
A/J	MGP_AJ_G0003425	antisense lncRNA gene	Chr18:34998963-35000157 (-)
AKR/J	MGP_AKRJ_G0003405	antisense lncRNA gene	Chr18:35958422-35959614 (-)
BALB/cJ	MGP_BALBcJ_G0003414	antisense lncRNA gene	Chr18:35064505-35065698 (-)
C3H/HeJ	MGP_C3HHeJ_G0003363	antisense lncRNA gene	Chr18:36025338-36026529 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003552	antisense lncRNA gene	Chr18:37545158-37546350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003066	antisense lncRNA gene	Chr18:35015657-35016833 (-)
CAST/EiJ	MGP_CASTEiJ_G0003326	antisense lncRNA gene	Chr18:35964985-35966166 (-)
CBA/J	MGP_CBAJ_G0003360	antisense lncRNA gene	Chr18:38652478-38653671 (-)
DBA/2J	MGP_DBA2J_G0003369	antisense lncRNA gene	Chr18:34598456-34599649 (-)
FVB/NJ	MGP_FVBNJ_G0003386	antisense lncRNA gene	Chr18:34308410-34309602 (-)
LP/J	MGP_LPJ_G0003440	antisense lncRNA gene	Chr18:36307364-36308556 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003374	antisense lncRNA gene	Chr18:39915356-39916547 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003555	antisense lncRNA gene	Chr18:35824390-35825582 (-)
PWK/PhJ	MGP_PWKPhJ_G0003282	antisense lncRNA gene	Chr18:34805382-34806572 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003227	antisense lncRNA gene	Chr18:36039667-36040840 (-)
WSB/EiJ	MGP_WSBEiJ_G0003360	antisense lncRNA gene	Chr18:35723922-35725114 (-)

Homology

• Gene Tree
  Gm29994
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm29994
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000102713 (Evidence)
• NCBI Gene
  102631725

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102713	Ensembl Gene Model | MGI Sequence Detail	1193	C57BL/6J
transcript	ENSMUST00000195495	Ensembl | MGI Sequence Detail	1193	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
• Latest
  J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)

TSS for Gm29994:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152991	Chr18:37963143-37963155 (-)	104 bp