Gm30075 Gene Detail

Summary

• Symbol
  Gm30075
• Name
  predicted gene, 30075

• Feature Type
  lncRNA gene
• IDs
  MGI:5589234
  NCBI Gene: 102631845
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:72852523-72888457 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1034 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589234	lncRNA gene	Chr7:72852246-72888457 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007207	lincRNA gene	Chr7:74738921-74773139 (-)
A/J	MGP_AJ_G0007203	lincRNA gene	Chr7:73065710-73101174 (-)
AKR/J	MGP_AKRJ_G0007173	lincRNA gene	Chr7:74603020-74638833 (-)
BALB/cJ	MGP_BALBcJ_G0007182	lincRNA gene	Chr7:72828403-72859436 (-)
C3H/HeJ	MGP_C3HHeJ_G0007125	lincRNA gene	Chr7:75358638-75397966 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007351	lincRNA gene	Chr7:77831790-77871362 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006560	lincRNA gene	Chr7:75707969-75737269 (-)
CAST/EiJ	MGP_CASTEiJ_G0007027	lincRNA gene	Chr7:66180215-66212724 (-)
CBA/J	MGP_CBAJ_G0007108	lincRNA gene	Chr7:80355828-80398627 (-)
DBA/2J	MGP_DBA2J_G0007129	lincRNA gene	Chr7:71735850-71767137 (-)
FVB/NJ	MGP_FVBNJ_G0007152	lincRNA gene	Chr7:71796383-71825970 (-)
LP/J	MGP_LPJ_G0007211	lincRNA gene	Chr7:75969115-76005918 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007129	lincRNA gene	Chr7:80546824-80577402 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007354	lincRNA gene	Chr7:74060184-74092357 (-)
PWK/PhJ	MGP_PWKPhJ_G0006970	lincRNA gene	Chr7:64877460-64910889 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006878	lincRNA gene	Chr7:61134702-61163851 (-)
WSB/EiJ	MGP_WSBEiJ_G0007089	lincRNA gene	Chr7:74396774-74434542 (-)

Homology

• Gene Tree
  Gm30075
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm30075
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000108513 (Evidence)
• NCBI Gene
  102631845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108513	Ensembl Gene Model | MGI Sequence Detail	35935	C57BL/6J
transcript	ENSMUST00000205509	Ensembl | MGI Sequence Detail	3005	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm30075:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72934	Chr7:72888393-72888410 (-)	55 bp