Gm30173 Gene Detail

Summary

• Symbol
  Gm30173
• Name
  predicted gene, 30173

• Feature Type
  lncRNA gene
• IDs
  MGI:5589332
  NCBI Gene: 102631981
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52424385-52457640 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589332	lncRNA gene	Chr3:52424385-52457640 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006185	lincRNA gene	Chr3:51066722-51101518 (+)
A/J	MGP_AJ_G0006177	lincRNA gene	Chr3:49546759-49580919 (+)
AKR/J	MGP_AKRJ_G0006153	lincRNA gene	Chr3:50533388-50569942 (+)
BALB/cJ	MGP_BALBcJ_G0006153	lincRNA gene	Chr3:49399635-49432776 (+)
C3H/HeJ	MGP_C3HHeJ_G0006103	lincRNA gene	Chr3:50766439-50803796 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006316	lincRNA gene	Chr3:53079836-53114248 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005626	lincRNA gene	Chr3:46153161-46186163 (+)
CAST/EiJ	MGP_CASTEiJ_G0006038	lincRNA gene	Chr3:50856720-50891442 (+)
CBA/J	MGP_CBAJ_G0006088	lincRNA gene	Chr3:54741844-54778220 (+)
DBA/2J	MGP_DBA2J_G0006107	lincRNA gene	Chr3:49141976-49174732 (+)
FVB/NJ	MGP_FVBNJ_G0006131	lincRNA gene	Chr3:48123133-48155967 (+)
LP/J	MGP_LPJ_G0006190	lincRNA gene	Chr3:51810448-51844546 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006121	lincRNA gene	Chr3:58903669-58937907 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006320	lincRNA gene	Chr3:50453686-50489027 (+)
PWK/PhJ	MGP_PWKPhJ_G0005983	lincRNA gene	Chr3:48800473-48830125 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005892	lincRNA gene	Chr3:50141706-50176170 (+)
WSB/EiJ	MGP_WSBEiJ_G0006085	lincRNA gene	Chr3:50574806-50608735 (+)

Homology

• Gene Tree
  Gm30173
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm30173
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000103965 (Evidence)
• NCBI Gene
  102631981

Representative Sequences			Length	Strain/Species
genomic	102631981	NCBI Gene Model | MGI Sequence Detail	33256	C57BL/6J
transcript	NR_153344	RefSeq | MGI Sequence Detail	1128	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm30173:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29096	Chr3:52424372-52424418 (+)	10 bp