Gm30217 Gene Detail

Summary

• Symbol
  Gm30217
• Name
  predicted gene, 30217

• Feature Type
  lncRNA gene
• IDs
  MGI:5589376
  NCBI Gene: 102632042
• Alliance
  gene page
• Transcription Start Sites
  15 TSS

Location &
Maps

• Sequence Map
  Chr11:52198311-52209547 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  393 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589376	lncRNA gene	Chr11:52198311-52209547 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm30217
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102632042

Representative Sequences			Length	Strain/Species
genomic	102632042	NCBI Gene Model | MGI Sequence Detail	11237	C57BL/6J
transcript	XR_388631	RefSeq | MGI Sequence Detail	676	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm30217:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101338	Chr11:52197590-52197603 (+)	-714 bp
Tssr101339	Chr11:52197609-52197620 (+)	-696 bp
Tssr101340	Chr11:52197799-52197815 (+)	-504 bp
Tssr101341	Chr11:52198453-52198466 (+)	149 bp
Tssr101342	Chr11:52198601-52198619 (+)	299 bp
Tssr101343	Chr11:52198624-52198633 (+)	318 bp
Tssr101344	Chr11:52198634-52198649 (+)	331 bp
Tssr101345	Chr11:52198687-52198690 (+)	378 bp
Tssr101346	Chr11:52198753-52198764 (+)	448 bp
Tssr101347	Chr11:52200334-52200360 (+)	2,036 bp
Tssr101348	Chr11:52200490-52200499 (+)	2,184 bp
Tssr101349	Chr11:52201816-52201825 (+)	3,510 bp
Tssr101350	Chr11:52201830-52201849 (+)	3,529 bp
Tssr101351	Chr11:52201852-52201875 (+)	3,553 bp
Tssr101352	Chr11:52201992-52202021 (+)	3,696 bp