Gm30382 Gene Detail

Summary

• Symbol
  Gm30382
• Name
  predicted gene, 30382

• Feature Type
  lncRNA gene
• IDs
  MGI:5589541
  NCBI Gene: 108167379
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr3:148990055-149151112 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4716 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589541	lncRNA gene	Chr3:148990055-149151112 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006361	lincRNA gene	Chr3:152921479-153090819 (-)
A/J	MGP_AJ_G0006354	lincRNA gene	Chr3:147416508-147581698 (-)
AKR/J	MGP_AKRJ_G0006329	lincRNA gene	Chr3:151366573-151534798 (-)
BALB/cJ	MGP_BALBcJ_G0006328	lincRNA gene	Chr3:147251134-147414051 (-)
C3H/HeJ	MGP_C3HHeJ_G0006279	lincRNA gene	Chr3:151730392-151894373 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006493	lincRNA gene	Chr3:158040823-158210554 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005788	lincRNA gene	Chr3:142380818-142539916 (-)
CAST/EiJ	MGP_CASTEiJ_G0006213	lincRNA gene	Chr3:151723554-151902114 (-)
CBA/J	MGP_CBAJ_G0006262	lincRNA gene	Chr3:163587896-163778450 (-)
DBA/2J	MGP_DBA2J_G0006283	lincRNA gene	Chr3:146555766-146715210 (-)
FVB/NJ	MGP_FVBNJ_G0006305	lincRNA gene	Chr3:143955790-144115481 (-)
LP/J	MGP_LPJ_G0006365	lincRNA gene	Chr3:154287472-154459179 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006295	lincRNA gene	Chr3:171948740-172124952 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006499	lincRNA gene	Chr3:150964683-151128610 (-)
PWK/PhJ	MGP_PWKPhJ_G0006150	lincRNA gene	Chr3:146435700-146601741 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006063	lincRNA gene	Chr3:149114340-149278578 (-)
WSB/EiJ	MGP_WSBEiJ_G0006259	lincRNA gene	Chr3:151943738-152113936 (-)

Homology

• Gene Tree
  Gm30382
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000106515 (Evidence)
• NCBI Gene
  108167379

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106515	Ensembl Gene Model | MGI Sequence Detail	161058	C57BL/6J
transcript	ENSMUST00000240773	Ensembl | MGI Sequence Detail	2639	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30382:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36105	Chr3:149151090-149151132 (-)	1 bp
Tssr36104	Chr3:149151013-149151054 (-)	78 bp
Tssr36103	Chr3:149150988-149151006 (-)	115 bp
Tssr36102	Chr3:149150904-149150915 (-)	202 bp
Tssr36101	Chr3:149150890-149150902 (-)	216 bp
Tssr36100	Chr3:149150823-149150881 (-)	260 bp
Tssr36099	Chr3:149035343-149035348 (-)	115,766 bp
Tssr36098	Chr3:149032402-149032405 (-)	118,708 bp