Gm30487 Gene Detail

Summary

• Symbol
  Gm30487
• Name
  predicted gene, 30487

• Feature Type
  lncRNA gene
• IDs
  MGI:5589646
  NCBI Gene: 102632408
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:106321710-106332263 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  540 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589646	lncRNA gene	Chr4:106321710-106334585 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm30487
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm30487
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  5

• Ensembl
  ENSMUSG00000120579 (Evidence)
• NCBI Gene
  102632408

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120579	Ensembl Gene Model | MGI Sequence Detail	10554	C57BL/6J
transcript	ENSMUST00000244288	Ensembl | MGI Sequence Detail	1094	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm30487:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38175	Chr4:106321425-106321429 (+)	-283 bp
Tssr1251	Chr4:106321650-106321663 (+)	-53 bp