Gm30513 Gene Detail

Summary

• Symbol
  Gm30513
• Name
  predicted gene, 30513

• Feature Type
  lncRNA gene
• IDs
  MGI:5589672
  NCBI Gene: 102632441
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr18:81967754-81970659 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589672	lncRNA gene	Chr18:81967746-81970853 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm30513
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm30513
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  2

• Ensembl
  ENSMUSG00000120297 (Evidence)
• NCBI Gene
  102632441

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120297	Ensembl Gene Model | MGI Sequence Detail	2906	C57BL/6J
transcript	ENSMUST00000242378	Ensembl | MGI Sequence Detail	1266	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm30513:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154072	Chr18:81970923-81970924 (-)	-265 bp
Tssr154071	Chr18:81970902-81970911 (-)	-248 bp
Tssr154070	Chr18:81970884-81970887 (-)	-227 bp
Tssr154069	Chr18:81970859-81970877 (-)	-209 bp
Tssr154068	Chr18:81970852-81970855 (-)	-195 bp
Tssr154067	Chr18:81970690-81970699 (-)	-36 bp
Tssr154066	Chr18:81970635-81970646 (-)	18 bp
Tssr154065	Chr18:81970421-81970456 (-)	220 bp
Tssr154064	Chr18:81967962-81967975 (-)	2,690 bp