Gm30784 Gene Detail

Summary

• Symbol
  Gm30784
• Name
  predicted gene, 30784
• Synonyms
  Gm44244

• Feature Type
  lncRNA gene
• IDs
  MGI:5589943
  NCBI Gene: 102632806
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:141812082-141821346 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  472 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589943	lncRNA gene	Chr6:141812075-141821856 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007087	lincRNA gene	Chr6:146649025-146659139 (+)
A/J	MGP_AJ_G0007084	lincRNA gene	Chr6:140868969-140877833 (+)
AKR/J	MGP_AKRJ_G0007052	lincRNA gene	Chr6:145063930-145072792 (+)
BALB/cJ	MGP_BALBcJ_G0007059	lincRNA gene	Chr6:140660540-140669580 (+)
C3H/HeJ	MGP_C3HHeJ_G0007004	lincRNA gene	Chr6:145120918-145129780 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007224	lincRNA gene	Chr6:150646717-150657769 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0006911	lincRNA gene	Chr6:144679727-144686974 (+)
CBA/J	MGP_CBAJ_G0006984	lincRNA gene	Chr6:156383199-156392901 (+)
DBA/2J	MGP_DBA2J_G0007006	lincRNA gene	Chr6:139677586-139686284 (+)
FVB/NJ	MGP_FVBNJ_G0007029	lincRNA gene	Chr6:138466773-138475961 (+)
LP/J	MGP_LPJ_G0007090	lincRNA gene	Chr6:146789938-146799090 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007009	lincRNA gene	Chr6:160266213-160279586 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007231	lincRNA gene	Chr6:144886294-144895211 (+)
PWK/PhJ	MGP_PWKPhJ_G0006855	lincRNA gene	Chr6:138187922-138196917 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006765	lincRNA gene	Chr6:143105065-143115378 (+)
WSB/EiJ	MGP_WSBEiJ_G0006971	lincRNA gene	Chr6:145541706-145550864 (+)

Homology

• Gene Tree
  Gm30784
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000107516 (Evidence)
• NCBI Gene
  102632806

Representative Sequences			Length	Strain/Species
genomic	102632806	NCBI Gene Model | MGI Sequence Detail	9265	C57BL/6J
transcript	XR_869565	RefSeq | MGI Sequence Detail	1196	C57BL/6J

Other
Accession IDs

MGI:5690636

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm30784:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59467	Chr6:141812069-141812082 (+)	-6 bp
Tssr59468	Chr6:141812084-141812091 (+)	6 bp
Tssr59469	Chr6:141812108-141812115 (+)	30 bp