Gm31005 Gene Detail

Summary

• Symbol
  Gm31005
• Name
  predicted gene, 31005

• Feature Type
  lncRNA gene
• IDs
  MGI:5590164
  NCBI Gene: 102633095
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:97192965-97201105 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  302 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590164	lncRNA gene	Chr11:97192157-97206654 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm31005
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  102
• Gene trapped
  101
• Targeted
  1
• Genomic Mutations
  1 involving Gm31005
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  4

• Ensembl
  ENSMUSG00000119952 (Evidence)
• NCBI Gene
  102633095

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119952	Ensembl Gene Model | MGI Sequence Detail	8141	C57BL/6J
transcript	ENSMUST00000240797	Ensembl | MGI Sequence Detail	680	Not Applicable

References

• Summaries
  All 13

  Phenotypes 10
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm31005:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110421	Chr11:97201144-97201161 (-)	-48 bp
Tssr110420	Chr11:97201116-97201133 (-)	-20 bp
Tssr110419	Chr11:97201099-97201115 (-)	-2 bp
Tssr110418	Chr11:97200853-97200886 (-)	235 bp
Tssr110417	Chr11:97200279-97200294 (-)	818 bp