Gm31298 Gene Detail

Summary

• Symbol
  Gm31298
• Name
  predicted gene, 31298

• Feature Type
  lncRNA gene
• IDs
  MGI:5590457
  NCBI Gene: 102633484
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:80448290-80458398 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  278 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590457	lncRNA gene	Chr10:80448290-80458398 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  11
• Genomic Mutations
  1 involving Gm31298
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  102633484

Representative Sequences			Length	Strain/Species
genomic	102633484	NCBI Gene Model | MGI Sequence Detail	10109	C57BL/6J
transcript	XR_871877	RefSeq | MGI Sequence Detail	723	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 9
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm31298:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98479	Chr10:80459441-80459482 (-)	-1,064 bp
Tssr98478	Chr10:80458428-80458443 (-)	-38 bp
Tssr98477	Chr10:80458355-80458360 (-)	40 bp