Gm31373 Gene Detail

Summary

• Symbol
  Gm31373
• Name
  predicted gene, 31373

• Feature Type
  lncRNA gene
• IDs
  MGI:5590532
  NCBI Gene: 102633582
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:190724868-190726682 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590532	lncRNA gene	Chr1:190724868-190726874 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005083	lincRNA gene	Chr1:198007628-198009613 (+)
A/J	MGP_AJ_G0005066	lincRNA gene	Chr1:189896953-189898938 (+)
AKR/J	MGP_AKRJ_G0005044	lincRNA gene	Chr1:195513685-195515670 (+)
BALB/cJ	MGP_BALBcJ_G0005047	lincRNA gene	Chr1:190569776-190571761 (+)
C3H/HeJ	MGP_C3HHeJ_G0004996	lincRNA gene	Chr1:196362823-196364808 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005197	lincRNA gene	Chr1:204317675-204319660 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004604	lincRNA gene	Chr1:180796178-180798108 (+)
CAST/EiJ	MGP_CASTEiJ_G0004943	lincRNA gene	Chr1:195950787-195952766 (+)
CBA/J	MGP_CBAJ_G0004986	lincRNA gene	Chr1:211875650-211877635 (+)
DBA/2J	MGP_DBA2J_G0005005	lincRNA gene	Chr1:188617998-188619983 (+)
FVB/NJ	MGP_FVBNJ_G0005026	lincRNA gene	Chr1:186742998-186744983 (+)
LP/J	MGP_LPJ_G0005084	lincRNA gene	Chr1:199179146-199181131 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005009	lincRNA gene	Chr1:218593688-218595673 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005204	lincRNA gene	Chr1:195399138-195401123 (+)
PWK/PhJ	MGP_PWKPhJ_G0004894	lincRNA gene	Chr1:187896817-187898802 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004819	lincRNA gene	Chr1:194385499-194387494 (+)
WSB/EiJ	MGP_WSBEiJ_G0004990	lincRNA gene	Chr1:195617075-195619058 (+)

Homology

• Gene Tree
  Gm31373
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000104487 (Evidence)
• NCBI Gene
  102633582

Representative Sequences			Length	Strain/Species
genomic	102633582	NCBI Gene Model | MGI Sequence Detail	1815	C57BL/6J
transcript	XR_373865	RefSeq | MGI Sequence Detail	653	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31373:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10719	Chr1:190724992-190725032 (+)	144 bp