Gm31728 Gene Detail

Summary

• Symbol
  Gm31728
• Name
  predicted gene, 31728

• Feature Type
  lncRNA gene
• IDs
  MGI:5590887
  NCBI Gene: 102634049
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:180083970-180093115 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  355 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590887	lncRNA gene	Chr1:180083925-180103777 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002804	antisense lncRNA gene	Chr1:186672183-186690943 (+)
A/J	MGP_AJ_G0002781	antisense lncRNA gene	Chr1:179130631-179149256 (+)
AKR/J	MGP_AKRJ_G0002762	antisense lncRNA gene	Chr1:184457293-184475764 (+)
BALB/cJ	MGP_BALBcJ_G0002768	antisense lncRNA gene	Chr1:179754500-179771174 (+)
C3H/HeJ	MGP_C3HHeJ_G0002726	antisense lncRNA gene	Chr1:185219822-185237053 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002910	antisense lncRNA gene	Chr1:192696323-192714917 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002457	antisense lncRNA gene	Chr1:170108986-170127514 (+)
CAST/EiJ	MGP_CASTEiJ_G0002698	antisense lncRNA gene	Chr1:184548153-184566377 (+)
CBA/J	MGP_CBAJ_G0002721	antisense lncRNA gene	Chr1:199855493-199875145 (+)
DBA/2J	MGP_DBA2J_G0002728	antisense lncRNA gene	Chr1:177971270-177988530 (+)
FVB/NJ	MGP_FVBNJ_G0002748	antisense lncRNA gene	Chr1:176064306-176081903 (+)
LP/J	MGP_LPJ_G0002804	antisense lncRNA gene	Chr1:187933990-187955118 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002738	antisense lncRNA gene	Chr1:207055766-207077009 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002915	antisense lncRNA gene	Chr1:184228944-184247414 (+)
PWK/PhJ	MGP_PWKPhJ_G0002656	antisense lncRNA gene	Chr1:177057987-177075958 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002606	antisense lncRNA gene	Chr1:183156515-183175687 (+)
WSB/EiJ	MGP_WSBEiJ_G0002727	antisense lncRNA gene	Chr1:184427941-184444854 (+)

Homology

• Gene Tree
  Gm31728
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm31728
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102923 (Evidence)
• NCBI Gene
  102634049

Representative Sequences			Length	Strain/Species
genomic	102634049	NCBI Gene Model | MGI Sequence Detail	9146	C57BL/6J
transcript	NR_168339	RefSeq | MGI Sequence Detail	782	ZRU/MplStud

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm31728:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10439	Chr1:180083955-180084000 (+)	8 bp