Gm31828 Gene Detail

Summary

• Symbol
  Gm31828
• Name
  predicted gene, 31828

• Feature Type
  lncRNA gene
• IDs
  MGI:5590987
  NCBI Gene: 102634183
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:93307076-93369615 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2073 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590987	lncRNA gene	Chr4:93258737-93369632 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm31828
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm31828
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  5

• Ensembl
  ENSMUSG00000120651 (Evidence)
• NCBI Gene
  102634183

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120651	Ensembl Gene Model | MGI Sequence Detail	62540	C57BL/6J
transcript	ENSMUST00000247343	Ensembl | MGI Sequence Detail	1943	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48

TSS for Gm31828:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42434	Chr4:93369592-93369627 (-)	5 bp