Gm32342 Gene Detail

Summary

• Symbol
  Gm32342
• Name
  predicted gene, 32342

• Feature Type
  lncRNA gene
• IDs
  MGI:5591501
  NCBI Gene: 102634858
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr19:37665835-37685994 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  646 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591501	lncRNA gene	Chr19:37665830-37686160 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm32342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  3
• Targeted
  1
• Genomic Mutations
  1 involving Gm32342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  5

• Ensembl
  ENSMUSG00000120139 (Evidence)
• NCBI Gene
  102634858

Representative Sequences			Length	Strain/Species
genomic	102634858	NCBI Gene Model | MGI Sequence Detail	20160	C57BL/6J
transcript	BC119547	GenBank | ENA | DDBJ | MGI Sequence Detail	1121	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm32342:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr159091	Chr19:37686146-37686162 (-)	-160 bp
Tssr159090	Chr19:37686121-37686142 (-)	-138 bp
Tssr159089	Chr19:37686060-37686078 (-)	-75 bp
Tssr159088	Chr19:37681526-37681569 (-)	4,446 bp