Gm33024 Gene Detail

Summary

• Symbol
  Gm33024
• Name
  predicted gene, 33024
• Synonyms
  Gm43918

• Feature Type
  lncRNA gene
• IDs
  MGI:5592183
  NCBI Gene: 102635771
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:83985880-83989103 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592183	lncRNA gene	Chr6:83985880-83989103 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004301	antisense lncRNA gene	Chr6:85065096-85068313 (-)
A/J	MGP_AJ_G0004279	antisense lncRNA gene	Chr6:81817365-81820592 (-)
AKR/J	MGP_AKRJ_G0004261	antisense lncRNA gene	Chr6:84186527-84189750 (-)
BALB/cJ	MGP_BALBcJ_G0004265	antisense lncRNA gene	Chr6:81841762-81844989 (-)
C3H/HeJ	MGP_C3HHeJ_G0004240	antisense lncRNA gene	Chr6:100227883-100231106 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004414	antisense lncRNA gene	Chr6:87404905-87408128 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003888	antisense lncRNA gene	Chr6:80180666-80183807 (-)
CAST/EiJ	MGP_CASTEiJ_G0004175	antisense lncRNA gene	Chr6:84204351-84207555 (-)
CBA/J	MGP_CBAJ_G0004207	antisense lncRNA gene	Chr6:90846945-90850168 (-)
DBA/2J	MGP_DBA2J_G0004223	antisense lncRNA gene	Chr6:81131469-81134692 (-)
FVB/NJ	MGP_FVBNJ_G0004239	antisense lncRNA gene	Chr6:80338644-80341871 (-)
LP/J	MGP_LPJ_G0004302	antisense lncRNA gene	Chr6:85055771-85058990 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004230	antisense lncRNA gene	Chr6:95118292-95121519 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004412	antisense lncRNA gene	Chr6:84005899-84009120 (-)
PWK/PhJ	MGP_PWKPhJ_G0004128	antisense lncRNA gene	Chr6:80040019-80043327 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004072	antisense lncRNA gene	Chr6:82832178-82835445 (-)
WSB/EiJ	MGP_WSBEiJ_G0004212	antisense lncRNA gene	Chr6:84432450-84435677 (-)

Homology

• Gene Tree
  Gm33024
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  1
• Gene trapped
  1
• Spontaneous
  1
• Genomic Mutations
  2 involving Gm33024
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000107682 (Evidence)
• NCBI Gene
  102635771

Representative Sequences			Length	Strain/Species
genomic	102635771	NCBI Gene Model | MGI Sequence Detail	3224	C57BL/6J
transcript	XR_377790	RefSeq | MGI Sequence Detail	825	C57BL/6J

Other
Accession IDs

MGI:5690310

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Gm33024:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61718	Chr6:83987073-83987076 (-)	2,028 bp