Gm33280 Gene Detail

Summary

• Symbol
  Gm33280
• Name
  predicted gene, 33280

• Feature Type
  lncRNA gene
• IDs
  MGI:5592439
  NCBI Gene: 102636118
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:36171066-36176302 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  344 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592439	lncRNA gene	Chr1:36171066-36177827 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004803	lincRNA gene	Chr1:34633742-34641691 (+)
A/J	MGP_AJ_G0004784	lincRNA gene	Chr1:33717172-33723851 (+)
AKR/J	MGP_AKRJ_G0004763	lincRNA gene	Chr1:34199389-34206049 (+)
BALB/cJ	MGP_BALBcJ_G0004766	lincRNA gene	Chr1:33413784-33420394 (+)
C3H/HeJ	MGP_C3HHeJ_G0004714	lincRNA gene	Chr1:34384639-34393760 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004916	lincRNA gene	Chr1:36214350-36222576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004348	lincRNA gene	Chr1:30780521-30787249 (+)
CAST/EiJ	MGP_CASTEiJ_G0004670	lincRNA gene	Chr1:34269030-34275657 (+)
CBA/J	MGP_CBAJ_G0004707	lincRNA gene	Chr1:37140419-37149826 (+)
DBA/2J	MGP_DBA2J_G0004725	lincRNA gene	Chr1:33058253-33064839 (+)
FVB/NJ	MGP_FVBNJ_G0004745	lincRNA gene	Chr1:32575340-32582175 (+)
LP/J	MGP_LPJ_G0004804	lincRNA gene	Chr1:35002225-35008822 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004730	lincRNA gene	Chr1:39403301-39409899 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004920	lincRNA gene	Chr1:34200652-34207262 (+)
PWK/PhJ	MGP_PWKPhJ_G0004622	lincRNA gene	Chr1:32799413-32805981 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004549	lincRNA gene	Chr1:34176910-34185138 (+)
WSB/EiJ	MGP_WSBEiJ_G0004712	lincRNA gene	Chr1:34174941-34181525 (+)

Homology

• Gene Tree
  Gm33280
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm33280
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000102202 (Evidence)
• NCBI Gene
  102636118

Representative Sequences			Length	Strain/Species
genomic	102636118	NCBI Gene Model | MGI Sequence Detail	5237	C57BL/6J
transcript	AK137601	GenBank | ENA | DDBJ | MGI Sequence Detail	4340	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm33280:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6248	Chr1:36171093-36171106 (+)	34 bp