Gm34583 Gene Detail

Summary

• Symbol
  Gm34583
• Name
  predicted gene, 34583
• Synonyms
  Gm42730, Nis-lncRNA

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:5593742
  NCBI Gene: 102637887
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:73547992-73548445 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  256 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593742	lncRNA gene	Chr5:73528258-73550118 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039726	pseudogene	Chr5:73376638-73390784 (+)
A/J	MGP_AJ_G0039727	pseudogene	Chr5:70631602-70643610 (+)
AKR/J	MGP_AKRJ_G0039651	pseudogene	Chr5:72914639-72925194 (+)
BALB/cJ	MGP_BALBcJ_G0039695	pseudogene	Chr5:71348938-71359365 (+)
C3H/HeJ	MGP_C3HHeJ_G0039358	pseudogene	Chr5:73318349-73329581 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040256	pseudogene	Chr5:76393638-76406928 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036885	pseudogene	Chr5:66329931-66340339 (+)
CAST/EiJ	MGP_CASTEiJ_G0038477	pseudogene	Chr5:72388245-72398356 (+)
CBA/J	MGP_CBAJ_G0039329	pseudogene	Chr5:78908611-78921254 (+)
DBA/2J	MGP_DBA2J_G0039522	pseudogene	Chr5:70709122-70719671 (+)
FVB/NJ	MGP_FVBNJ_G0039481	pseudogene	Chr5:69853300-69865769 (+)
LP/J	MGP_LPJ_G0039561	pseudogene	Chr5:73814788-73828984 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040357	pseudogene	Chr5:72462462-72472781 (+)
PWK/PhJ	MGP_PWKPhJ_G0038151	pseudogene	Chr5:69680956-69691320 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037899	pseudogene	Chr5:71818557-71829320 (+)
WSB/EiJ	MGP_WSBEiJ_G0038711	pseudogene	Chr5:72754542-72766097 (+)

Homology

• Gene Tree
  Gm34583
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotypes from 1 allele in 2 genetic backgrounds
  358 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  3
• Targeted
  1
• Genomic Mutations
  6 involving Gm34583
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a conditional allele activated in sensory neurons exhibit attenuation of nociception hypersensitivity induced by nerve injury.

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000107272 (Evidence)
• NCBI Gene
  102637887

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107272	Ensembl Gene Model | MGI Sequence Detail	454	C57BL/6J
transcript	ENSMUST00000202586	Ensembl | MGI Sequence Detail	454	Not Applicable

Other
Accession IDs

MGI:5662867

References

• Summaries
  All 363

  Diseases 1

  Phenotypes 358
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:353367 Taketomi Y, et al., Lipid-orchestrated paracrine circuit coordinates mast cell maturation and anaphylaxis through functional interaction with fibroblasts. Immunity. 2024 Aug 13;57(8):1828-1847.e11