Gm34643 Gene Detail

Summary

• Symbol
  Gm34643
• Name
  predicted gene, 34643

• Feature Type
  lncRNA gene
• IDs
  MGI:5593802
  NCBI Gene: 102637961
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr14:103250311-103261890 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  545 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593802	lncRNA gene	Chr14:103250311-103261893 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm34643
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34643
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000115855 (Evidence)
• NCBI Gene
  102637961

Representative Sequences			Length	Strain/Species
genomic	102637961	NCBI Gene Model | MGI Sequence Detail	11580	C57BL/6J
transcript	NR_166851	RefSeq | MGI Sequence Detail	2319	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm34643:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126957	Chr14:103250260-103250280 (+)	-41 bp
Tssr126958	Chr14:103250306-103250323 (+)	4 bp
Tssr126959	Chr14:103250329-103250338 (+)	23 bp
Tssr126960	Chr14:103250367-103250403 (+)	74 bp
Tssr126961	Chr14:103251862-103251898 (+)	1,569 bp
Tssr126962	Chr14:103251921-103251931 (+)	1,615 bp
Tssr126963	Chr14:103251935-103251955 (+)	1,634 bp
Tssr126964	Chr14:103252552-103252560 (+)	2,245 bp
Tssr126965	Chr14:103254791-103254799 (+)	4,484 bp