Gm34780 Gene Detail

Summary

• Symbol
  Gm34780
• Name
  predicted gene, 34780

• Feature Type
  lncRNA gene
• IDs
  MGI:5593939
  NCBI Gene: 102638146
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:65401508-65402456 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593939	lncRNA gene	Chr3:65401508-65402456 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001176	unclassified gene	Chr3:64607886-64608834 (-)
A/J	MGP_AJ_G0001157	unclassified gene	Chr3:62735341-62736289 (-)
AKR/J	MGP_AKRJ_G0001143	unclassified gene	Chr3:64006699-64007647 (-)
BALB/cJ	MGP_BALBcJ_G0001150	unclassified gene	Chr3:62552887-62553835 (-)
C3H/HeJ	MGP_C3HHeJ_G0001131	unclassified gene	Chr3:64307931-64308879 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001265	unclassified gene	Chr3:67048245-67049193 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000977	unclassified gene	Chr3:59128240-59129196 (-)
CAST/EiJ	MGP_CASTEiJ_G0001112	unclassified gene	Chr3:64246194-64247142 (-)
CBA/J	MGP_CBAJ_G0001122	unclassified gene	Chr3:69113667-69114615 (-)
DBA/2J	MGP_DBA2J_G0001126	unclassified gene	Chr3:62228652-62229600 (-)
FVB/NJ	MGP_FVBNJ_G0001136	unclassified gene	Chr3:60880020-60880968 (-)
LP/J	MGP_LPJ_G0001185	unclassified gene	Chr3:65522376-65523324 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001125	unclassified gene	Chr3:73730031-73730979 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001256	unclassified gene	Chr3:63920436-63921384 (-)
PWK/PhJ	MGP_PWKPhJ_G0001070	unclassified gene	Chr3:61976255-61977203 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001047	unclassified gene	Chr3:63128918-63129866 (-)
WSB/EiJ	MGP_WSBEiJ_G0001130	unclassified gene	Chr3:64052251-64053199 (-)

Homology

• Gene Tree
  Gm34780
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm34780
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103513 (Evidence)
• NCBI Gene
  102638146

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103513	Ensembl Gene Model | MGI Sequence Detail	949	C57BL/6J
transcript	AK076670	GenBank | ENA | DDBJ | MGI Sequence Detail	950	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;