Gm35002 Gene Detail

Summary

• Symbol
  Gm35002
• Name
  predicted gene, 35002

• Feature Type
  lncRNA gene
• IDs
  MGI:5594161
  NCBI Gene: 102638432
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:93234142-93292632 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2191 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594161	lncRNA gene	Chr11:93234142-93292632 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm35002
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102638432

Representative Sequences			Length	Strain/Species
genomic	102638432	NCBI Gene Model | MGI Sequence Detail	58491	C57BL/6J
transcript	XR_388957	RefSeq | MGI Sequence Detail	49623	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm35002:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104142	Chr11:93232334-93232341 (+)	-1,804 bp
Tssr104143	Chr11:93269326-93269331 (+)	35,187 bp
Tssr104144	Chr11:93292430-93292469 (+)	58,308 bp