Gm35025 Gene Detail

Summary

• Symbol
  Gm35025
• Name
  predicted gene, 35025

• Feature Type
  lncRNA gene
• IDs
  MGI:5594184
  NCBI Gene: 102638470
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:108700319-108702297 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594184	lncRNA gene	Chr9:108700319-108703172 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015761	unclassified non-coding RNA gene	Chr9:110814940-110816100 (-)
A/J	MGP_AJ_G0015738	unclassified non-coding RNA gene	Chr9:106747590-106748750 (-)
AKR/J	MGP_AKRJ_G0015701	unclassified non-coding RNA gene	Chr9:109426308-109427468 (-)
BALB/cJ	MGP_BALBcJ_G0015699	unclassified non-coding RNA gene	Chr9:106441944-106443104 (-)
C3H/HeJ	MGP_C3HHeJ_G0015520	unclassified non-coding RNA gene	Chr9:109825245-109826405 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016154	unclassified non-coding RNA gene	Chr9:113836185-113837345 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013879	unclassified non-coding RNA gene	Chr9:104159213-104160367 (-)
CAST/EiJ	MGP_CASTEiJ_G0015075	unclassified non-coding RNA gene	Chr9:109790523-109791682 (-)
CBA/J	MGP_CBAJ_G0015500	unclassified non-coding RNA gene	Chr9:117858521-117859680 (-)
DBA/2J	MGP_DBA2J_G0015599	unclassified non-coding RNA gene	Chr9:106202661-106203821 (-)
FVB/NJ	MGP_FVBNJ_G0015604	unclassified non-coding RNA gene	Chr9:104969566-104970726 (-)
LP/J	MGP_LPJ_G0015679	unclassified non-coding RNA gene	Chr9:111003631-111004791 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015627	unclassified non-coding RNA gene	Chr9:119413000-119414160 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016197	unclassified non-coding RNA gene	Chr9:109701852-109703012 (-)
PWK/PhJ	MGP_PWKPhJ_G0014858	unclassified non-coding RNA gene	Chr9:106534102-106535261 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014645	unclassified non-coding RNA gene	Chr9:109767009-109768168 (-)
WSB/EiJ	MGP_WSBEiJ_G0015179	unclassified non-coding RNA gene	Chr9:109594334-109595494 (-)

Homology

• Gene Tree
  Gm35025
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000103785 (Evidence)
• NCBI Gene
  102638470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103785	Ensembl Gene Model | MGI Sequence Detail	1979	C57BL/6J
transcript	ENSMUST00000192885	Ensembl | MGI Sequence Detail	1742	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35025:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91557	Chr9:108702013-108702054 (-)	263 bp