Gm35040 Gene Detail

Summary

• Symbol
  Gm35040
• Name
  predicted gene, 35040

• Feature Type
  lncRNA gene
• IDs
  MGI:5594199
  NCBI Gene: 102638488
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:79185760-79209781 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  647 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594199	lncRNA gene	Chr7:79185760-79209781 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007223	lincRNA gene	Chr7:81423846-81451656 (+)
A/J	MGP_AJ_G0007220	lincRNA gene	Chr7:79546309-79571494 (+)
AKR/J	MGP_AKRJ_G0007190	lincRNA gene	Chr7:81249900-81273680 (+)
BALB/cJ	MGP_BALBcJ_G0007198	lincRNA gene	Chr7:79240882-79265396 (+)
C3H/HeJ	MGP_C3HHeJ_G0007142	lincRNA gene	Chr7:81912046-81939257 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007368	lincRNA gene	Chr7:84624324-84649956 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006576	lincRNA gene	Chr7:82086462-82111443 (+)
CAST/EiJ	MGP_CASTEiJ_G0007044	lincRNA gene	Chr7:72784087-72809232 (+)
CBA/J	MGP_CBAJ_G0007125	lincRNA gene	Chr7:87457261-87484171 (+)
DBA/2J	MGP_DBA2J_G0007146	lincRNA gene	Chr7:78119852-78143817 (+)
FVB/NJ	MGP_FVBNJ_G0007169	lincRNA gene	Chr7:78032569-78056633 (+)
LP/J	MGP_LPJ_G0007228	lincRNA gene	Chr7:82673972-82703361 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007145	lincRNA gene	Chr7:87641720-87665683 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007371	lincRNA gene	Chr7:80702075-80726987 (+)
PWK/PhJ	MGP_PWKPhJ_G0006987	lincRNA gene	Chr7:71287204-71312220 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006895	lincRNA gene	Chr7:67690668-67716963 (+)
WSB/EiJ	MGP_WSBEiJ_G0007105	lincRNA gene	Chr7:81029052-81054931 (+)

Homology

• Gene Tree
  Gm35040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm35040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000108616 (Evidence)
• NCBI Gene
  102638488

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108616	Ensembl Gene Model | MGI Sequence Detail	24022	C57BL/6J
transcript	ENSMUST00000206829	Ensembl | MGI Sequence Detail	5125	Not Applicable

References

• Summaries
  All 12

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm35040:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67355	Chr7:79185745-79185809 (+)	17 bp
Tssr67356	Chr7:79185889-79185914 (+)	142 bp