Gm35077 Gene Detail

Summary

• Symbol
  Gm35077
• Name
  predicted gene, 35077
• Synonyms
  Gm44042

• Feature Type
  lncRNA gene
• IDs
  MGI:5594236
  NCBI Gene: 102638540
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:58474941-58510675 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1195 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594236	lncRNA gene	Chr6:58434853-58510675 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0006968	lincRNA gene	Chr6:54210116-55574442 (-)
AKR/J	MGP_AKRJ_G0006938	lincRNA gene	Chr6:56010681-57403113 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0007107	lincRNA gene	Chr6:58095202-59421834 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0006914	lincRNA gene	Chr6:53672318-54870882 (-)
LP/J	MGP_LPJ_G0006973	lincRNA gene	Chr6:56771851-58055584 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006894	lincRNA gene	Chr6:62996735-64522585 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007111	lincRNA gene	Chr6:55979649-57298442 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm35077
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000107960 (Evidence)
• NCBI Gene
  102638540

Representative Sequences			Length	Strain/Species
genomic	102638540	NCBI Gene Model | MGI Sequence Detail	35735	C57BL/6J
transcript	XR_869135	RefSeq | MGI Sequence Detail	279	C57BL/6J

Other
Accession IDs

MGI:5690434

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35077:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61169	Chr6:58510598-58510625 (-)	63 bp