Gm35107 Gene Detail

Summary

• Symbol
  Gm35107
• Name
  predicted gene, 35107

• Feature Type
  lncRNA gene
• IDs
  MGI:5594266
  NCBI Gene: 102638574
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:47973632-47994945 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  538 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594266	lncRNA gene	ChrX:47973632-48083674 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm35107
  

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  3

• Ensembl
  ENSMUSG00000119964 (Evidence)
• NCBI Gene
  102638574

Representative Sequences			Length	Strain/Species
genomic	102638574	NCBI Gene Model | MGI Sequence Detail	21314	C57BL/6J
transcript	KY468247	GenBank | ENA | DDBJ | MGI Sequence Detail	484	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35107:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5619	ChrX:47973777-47973798 (+)	156 bp
Tssr160919	ChrX:47973823-47973835 (+)	197 bp
Tssr160920	ChrX:47973894-47973906 (+)	268 bp