Gm35200 Gene Detail

Summary

• Symbol
  Gm35200
• Name
  predicted gene, 35200

• Feature Type
  lncRNA gene
• IDs
  MGI:5594359
  NCBI Gene: 102638704
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:171381094-171389641 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  483 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594359	lncRNA gene	Chr1:171381094-171389641 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving Gm35200
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  102638704

Representative Sequences			Length	Strain/Species
genomic	102638704	NCBI Gene Model | MGI Sequence Detail	8548	C57BL/6J
transcript	XR_003948771	RefSeq | MGI Sequence Detail	3721	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:237231 Guo H, et al., Deletion of Slam locus in mice reveals inhibitory role of SLAM family in NK cell responses regulated by cytokines and LFA-1. J Exp Med. 2016 Sep 19;213(10):2187-207
• Latest
  J:328788 Tang Z, et al., Inflammatory macrophages exploit unconventional pro-phagocytic integrins for phagocytosis and anti-tumor immunity. Cell Rep. 2021 Dec 14;37(11):110111

TSS for Gm35200:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15049	Chr1:171389601-171389643 (-)	19 bp