Gm35202 Gene Detail

Summary

• Symbol
  Gm35202
• Name
  predicted gene, 35202

• Feature Type
  lncRNA gene
• IDs
  MGI:5594361
  NCBI Gene: 108168745
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:35393543-35396102 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594361	lncRNA gene	Chr2:35393536-35396104 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005898	lincRNA gene	Chr2:34152588-34155147 (+)
A/J	MGP_AJ_G0005891	lincRNA gene	Chr2:32706395-32708954 (+)
AKR/J	MGP_AKRJ_G0005866	lincRNA gene	Chr2:33854078-33856637 (+)
BALB/cJ	MGP_BALBcJ_G0005870	lincRNA gene	Chr2:32814820-32817379 (+)
C3H/HeJ	MGP_C3HHeJ_G0005817	lincRNA gene	Chr2:33746979-33749453 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006030	lincRNA gene	Chr2:35145389-35147948 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005364	lincRNA gene	Chr2:31394110-31396700 (+)
CAST/EiJ	MGP_CASTEiJ_G0005753	lincRNA gene	Chr2:33753756-33756300 (+)
CBA/J	MGP_CBAJ_G0005802	lincRNA gene	Chr2:36486279-36488838 (+)
DBA/2J	MGP_DBA2J_G0005823	lincRNA gene	Chr2:32470981-32473540 (+)
FVB/NJ	MGP_FVBNJ_G0005849	lincRNA gene	Chr2:32373706-32376265 (+)
LP/J	MGP_LPJ_G0005902	lincRNA gene	Chr2:34078602-34081161 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005836	lincRNA gene	Chr2:35983220-35985779 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006027	lincRNA gene	Chr2:33739376-33741935 (+)
PWK/PhJ	MGP_PWKPhJ_G0005702	lincRNA gene	Chr2:32395582-32401098 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005614	lincRNA gene	Chr2:33929735-33932288 (+)
WSB/EiJ	MGP_WSBEiJ_G0005806	lincRNA gene	Chr2:33940854-33943329 (+)

Homology

• Gene Tree
  Gm35202
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085668 (Evidence)
• NCBI Gene
  108168745

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085668	Ensembl Gene Model | MGI Sequence Detail	2560	C57BL/6J
transcript	ENSMUST00000130083	Ensembl | MGI Sequence Detail	712	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm35202:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17473	Chr2:35393529-35393548 (+)	-4 bp